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Summary of your gene list
Dataset name
ID mapping
Settings
Genes
Annotations
Enrichment
Background
SynGO release
Below data tables show all SynGO ontology terms that are enriched in your gene list as compared to the selected background set.
The gene count column shows the number of unique genes from your input that are annotated in SynGO against this term or any of its child terms. For each ontology term, a one-sided Fisher exact test is performed to compare your gene list and the selected background set, the result is shown in the "p-value" column.
To find enriched terms within the entire SynGO ontology, we first select the most specific term where each 'gene cluster' (unique set of genes) is found and then apply multiple testing correction using False Discovery Rate (FDR). The result is found in the "q-value" column (NaN entries indicate the term either holds too few genes or was not a 'gene cluster').
A more detailed description can be found at this section of the help page.
Cellular Component ontology terms

Biological Process ontology terms
Below data tables show all SynGO annotations for Cellular Components (locations) and Biological Processes (functions) that match your gene list.
To view the detailed evidence behind an annotation, click its ID in the first column. To view all available data for any gene in this table, click the respective gene symbol in the second column.
Cellular Component annotations

Biological Process annotations
ontology selected by user in the plot above
input gene list mapped to SynGO annotated human gene IDs
Evidence filters
Optionally, you can filter annotations used in this analysis by their experimental evidence.
More info on evidence tracking can be found at this section of the help page.
GSEA settings
Gene Set Enrichment Analysis (GSEA) settings allow you to adjust inclusion criteria; use the dropdown menu below to change the minimum gene count for ontology terms to be included in the overrepresentation analysis.
Export the figure shown above as a vector graphic (SVG) file (more info on the help page). Use the plot options above in conjuncture with this function to capture visualizations of your gene list. eg; set the domain to 'Function' to show the Biological Process model, select your preferred color-coding for the ontology terms and hit the 'download figure' button !
Export SynGO annotations and enriched ontologies matching your gene list. The download package also includes the mapping from your input genes to the SynGO gene identifiers. The included readme.txt file contains further details.